Bioconductor Entrez gene identifiers

Showing : entrez gene identifiers • reset

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2.5k

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biomart entrez gene identifiers ensembl conversion

updated 6.0 years ago by Mike Smith ★ 6.6k • written 6.0 years ago by EdgeR_A_Poe ▴ 10

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2.8k

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biomart ensembl entrez gene identifiers

updated 6.3 years ago by James W. MacDonald 67k • written 6.3 years ago by rina ▴ 30

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13k

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org.hs.eg.db entrez gene identifiers genesymbols

updated 6.8 years ago by mat149 ▴ 80 • written 6.8 years ago by imalumberjack ▴ 10

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3.2k

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bioconductor biomart entrez gene identifiers ensembl ensembl mart

updated 7.6 years ago by Thomas Maurel ▴ 800 • written 7.6 years ago by daniel.carbajo • 0

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2.0k

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org.Hs.eg.db entrez gene identifiers ensemble

updated 7.7 years ago by James W. MacDonald 67k • written 7.7 years ago by Marcus Aurelius • 0

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2.2k

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getBM entrez gene identifiers duplicate rnaseq

7.9 years ago Jose Luis Soto Vázquez • 0

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1.5k

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goseq entrez gene identifiers

updated 8.5 years ago by James W. MacDonald 67k • written 8.5 years ago by Mehmet Ilyas Cosacak • 0

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1.3k

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biomart ensembl ensemble mart entrez gene identifiers

8.8 years ago serpalma.v ▴ 60

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1.2k

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mta10 entrez gene identifiers

updated 9.0 years ago by James W. MacDonald 67k • written 9.0 years ago by jacorvar ▴ 40

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14k

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org.hs.eg.db uniprot accessions entrez gene identifiers

updated 9.2 years ago by James W. MacDonald 67k • written 9.2 years ago by Aditya ▴ 160

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Comment: WGCNA with TPM tables by ATpoint ★ 4.5k

WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

You are an absolute lifesaver, thank you so much for the clarification!

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

The `EnsDb.Mmusculus.v79` package is mm38, not mm39. If you want a current `EnsDb`, use `AnnotationHub` ``` > library(AnnotationHub) >…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…

Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 880

If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …

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Answer: ANOVA like approach of edgeR

A: ANOVA-like test with edgeR

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

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